knitr::opts_chunk$set(echo = FALSE, warning = FALSE, message = FALSE)
suppressMessages(suppressWarnings(library(knitr)))
suppressMessages(suppressWarnings(library(ggplot2)))
suppressMessages(suppressWarnings(library(ggrepel)))
suppressMessages(suppressWarnings(library(data.table)))
suppressMessages(suppressWarnings(library(rtracklayer)))
suppressMessages(suppressWarnings(library(plotly)))
suppressMessages(suppressWarnings(library(GenomicRanges)))
suppressMessages(suppressWarnings(library(parallel)))
suppressMessages(suppressWarnings(library(pbapply)))
suppressMessages(suppressWarnings(library(DT)))
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
##
## locale:
## [1] LC_CTYPE=C LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] parallel stats4 stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] DT_0.12 pbapply_1.4-2 plotly_4.9.2.1
## [4] rtracklayer_1.44.4 GenomicRanges_1.36.1 GenomeInfoDb_1.20.0
## [7] IRanges_2.18.3 S4Vectors_0.22.1 BiocGenerics_0.30.0
## [10] data.table_1.12.8 ggrepel_0.8.2 ggplot2_3.3.1
## [13] knitr_1.28 rmarkdown_2.1
##
## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.4.6 lattice_0.20-40
## [3] tidyr_1.0.2 Rsamtools_2.0.3
## [5] Biostrings_2.52.0 assertthat_0.2.1
## [7] digest_0.6.25 R6_2.4.1
## [9] evaluate_0.14 httr_1.4.1
## [11] pillar_1.4.4 zlibbioc_1.30.0
## [13] rlang_0.4.6 lazyeval_0.2.2
## [15] Matrix_1.2-18 BiocParallel_1.18.1
## [17] stringr_1.4.0 htmlwidgets_1.5.1
## [19] RCurl_1.98-1.1 munsell_0.5.0
## [21] DelayedArray_0.10.0 compiler_3.6.0
## [23] xfun_0.12 pkgconfig_2.0.3
## [25] htmltools_0.4.0 tidyselect_1.0.0
## [27] SummarizedExperiment_1.14.1 tibble_3.0.1
## [29] GenomeInfoDbData_1.2.1 matrixStats_0.55.0
## [31] XML_3.99-0.3 viridisLite_0.3.0
## [33] crayon_1.3.4 dplyr_0.8.5
## [35] withr_2.2.0 GenomicAlignments_1.20.1
## [37] bitops_1.0-6 grid_3.6.0
## [39] jsonlite_1.6.1 gtable_0.3.0
## [41] lifecycle_0.2.0 magrittr_1.5
## [43] scales_1.1.1 stringi_1.4.6
## [45] XVector_0.24.0 ellipsis_0.3.1
## [47] vctrs_0.3.1 tools_3.6.0
## [49] Biobase_2.44.0 glue_1.4.1
## [51] purrr_0.3.4 yaml_2.2.1
## [53] colorspace_1.4-1