knitr::opts_chunk$set(echo = FALSE, warning = FALSE, message = FALSE)
suppressMessages(suppressWarnings(library(knitr)))
suppressMessages(suppressWarnings(library(ggplot2)))
suppressMessages(suppressWarnings(library(ggrepel)))
suppressMessages(suppressWarnings(library(data.table)))
suppressMessages(suppressWarnings(library(rtracklayer)))
suppressMessages(suppressWarnings(library(plotly)))
suppressMessages(suppressWarnings(library(GenomicRanges)))
suppressMessages(suppressWarnings(library(parallel)))
suppressMessages(suppressWarnings(library(pbapply)))
suppressMessages(suppressWarnings(library(DT)))

1 Session information:

## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
## 
## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
## 
## locale:
##  [1] LC_CTYPE=C                 LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] DT_0.12              pbapply_1.4-2        plotly_4.9.2.1      
##  [4] rtracklayer_1.44.4   GenomicRanges_1.36.1 GenomeInfoDb_1.20.0 
##  [7] IRanges_2.18.3       S4Vectors_0.22.1     BiocGenerics_0.30.0 
## [10] data.table_1.12.8    ggrepel_0.8.2        ggplot2_3.3.1       
## [13] knitr_1.28           rmarkdown_2.1       
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_1.0.4.6                lattice_0.20-40            
##  [3] tidyr_1.0.2                 Rsamtools_2.0.3            
##  [5] Biostrings_2.52.0           assertthat_0.2.1           
##  [7] digest_0.6.25               R6_2.4.1                   
##  [9] evaluate_0.14               httr_1.4.1                 
## [11] pillar_1.4.4                zlibbioc_1.30.0            
## [13] rlang_0.4.6                 lazyeval_0.2.2             
## [15] Matrix_1.2-18               BiocParallel_1.18.1        
## [17] stringr_1.4.0               htmlwidgets_1.5.1          
## [19] RCurl_1.98-1.1              munsell_0.5.0              
## [21] DelayedArray_0.10.0         compiler_3.6.0             
## [23] xfun_0.12                   pkgconfig_2.0.3            
## [25] htmltools_0.4.0             tidyselect_1.0.0           
## [27] SummarizedExperiment_1.14.1 tibble_3.0.1               
## [29] GenomeInfoDbData_1.2.1      matrixStats_0.55.0         
## [31] XML_3.99-0.3                viridisLite_0.3.0          
## [33] crayon_1.3.4                dplyr_0.8.5                
## [35] withr_2.2.0                 GenomicAlignments_1.20.1   
## [37] bitops_1.0-6                grid_3.6.0                 
## [39] jsonlite_1.6.1              gtable_0.3.0               
## [41] lifecycle_0.2.0             magrittr_1.5               
## [43] scales_1.1.1                stringi_1.4.6              
## [45] XVector_0.24.0              ellipsis_0.3.1             
## [47] vctrs_0.3.1                 tools_3.6.0                
## [49] Biobase_2.44.0              glue_1.4.1                 
## [51] purrr_0.3.4                 yaml_2.2.1                 
## [53] colorspace_1.4-1