knitr::opts_chunk$set(echo = FALSE, warning = FALSE, message = FALSE)
suppressMessages(suppressWarnings(library(knitr)))
suppressMessages(suppressWarnings(library(ggplot2)))
suppressMessages(suppressWarnings(library(ggrepel)))
suppressMessages(suppressWarnings(library(data.table)))
suppressMessages(suppressWarnings(library(rtracklayer)))
suppressMessages(suppressWarnings(library(plotly)))
suppressMessages(suppressWarnings(library(GenomicRanges)))
suppressMessages(suppressWarnings(library(parallel)))
suppressMessages(suppressWarnings(library(pbapply)))
suppressMessages(suppressWarnings(library(DT)))

1 Session information:

## R version 4.3.1 (2023-06-16)
## Platform: x86_64-unknown-linux-gnu (64-bit)
## Running under: Ubuntu 22.04.3 LTS
## 
## Matrix products: default
## BLAS/LAPACK: /gnu/store/rzg8m1a517hzzvwzp8vrsdysv93m4xrr-openblas-0.3.20/lib/libopenblasp-r0.3.20.so;  LAPACK version 3.9.0
## 
## locale:
## [1] C
## 
## time zone: Europe/Berlin
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] DT_0.30              pbapply_1.7-2        plotly_4.10.3       
##  [4] rtracklayer_1.62.0   GenomicRanges_1.54.1 GenomeInfoDb_1.38.0 
##  [7] IRanges_2.36.0       S4Vectors_0.40.1     BiocGenerics_0.48.1 
## [10] data.table_1.14.8    ggrepel_0.9.4        ggplot2_3.4.4       
## [13] knitr_1.45           rmarkdown_2.25      
## 
## loaded via a namespace (and not attached):
##  [1] SummarizedExperiment_1.32.0 gtable_0.3.4               
##  [3] rjson_0.2.21                xfun_0.40                  
##  [5] bslib_0.5.1                 htmlwidgets_1.6.2          
##  [7] Biobase_2.62.0              lattice_0.22-5             
##  [9] vctrs_0.6.4                 tools_4.3.1                
## [11] bitops_1.0-7                generics_0.1.3             
## [13] tibble_3.2.1                fansi_1.0.5                
## [15] pkgconfig_2.0.3             Matrix_1.6-1.1             
## [17] lifecycle_1.0.3             GenomeInfoDbData_1.2.0     
## [19] compiler_4.3.1              Rsamtools_2.18.0           
## [21] Biostrings_2.70.1           munsell_0.5.0              
## [23] codetools_0.2-19            htmltools_0.5.6.1          
## [25] sass_0.4.7                  lazyeval_0.2.2             
## [27] RCurl_1.98-1.12             yaml_2.3.7                 
## [29] tidyr_1.3.0                 pillar_1.9.0               
## [31] crayon_1.5.2                jquerylib_0.1.4            
## [33] BiocParallel_1.36.0         cachem_1.0.8               
## [35] DelayedArray_0.28.0         abind_1.4-5                
## [37] tidyselect_1.2.0            digest_0.6.33              
## [39] purrr_1.0.2                 dplyr_1.1.3                
## [41] restfulr_0.0.15             fastmap_1.1.1              
## [43] grid_4.3.1                  colorspace_2.1-0           
## [45] cli_3.6.1                   SparseArray_1.2.0          
## [47] magrittr_2.0.3              S4Arrays_1.2.0             
## [49] XML_3.99-0.14               utf8_1.2.4                 
## [51] withr_2.5.2                 scales_1.2.1               
## [53] httr_1.4.7                  XVector_0.42.0             
## [55] matrixStats_1.0.0           evaluate_0.22              
## [57] BiocIO_1.12.0               viridisLite_0.4.2          
## [59] rlang_1.1.1                 Rcpp_1.0.11                
## [61] glue_1.6.2                  jsonlite_1.8.7             
## [63] R6_2.5.1                    MatrixGenerics_1.14.0      
## [65] GenomicAlignments_1.38.0