1 Distance of samples by various metrics

1.1 Jaccard distance based on shared target genes

Figure 1 : Jaccard distance based on shared target genes. Here we plot the distance matrix between samples based on the Jaccard index computed for each pairwise sample based on how many genes the compared pair of samples co-overlap.

1.2 Clustering of samples based on overlaps with transcript features

Figure 2 : Clustering of samples based on overlaps with transcript features

2 Motif Discovery

Figure 3 : Feature specific motifs discovered for each sample

3 Feature Boundary Coverage Profiles

3.1 Smoothed line plots

Figure 4 : Feature boundary coverage profiles for each sample