Public hubs


Lab Display Hub Name Description Assemblies Hub Url
Akalin dorina2_Hub DoRiNA2 tracks and date hub ce6 dm3 hg19 mm9 http://bimsbstatic.mdc-berlin.de/hubs/akalin/dorinaHub/hub.txt
Akalin EnhancerDefinitionhg19 Enhancer Def: JEME EnhAtlas GenenHancer ChromHMM FOCS hg19 http://bimsbstatic.mdc-berlin.de/hubs/akalin/EnhancerDefinitionhg19/hub.txt
Akalin HOTRegions Wreczycka et al., HOT Regions Tracks hg19 mm9 http://bimsbstatic.mdc-berlin.de/hubs/akalin/HOTRegions/hub.txt
Akalin Ascl1-Insm1 Ascl1-Insm chip-seq tracks mm10 rn6 http://bimsbstatic.mdc-berlin.de/hubs/akalin/CBirchmeier_Ascl1/hub.txt
Akalin ALL_scGT gDNA from ALL single cells G&T-seq hg19 http://bimsbstatic.mdc-berlin.de/hubs/akalin/Baldus_ALL_scGandT/hub.txt
Landthaler Landthaler_HSV Landthaler lab HSV-1 data hg19 http://bimsbstatic.mdc-berlin.de/hubs/landthaler/HSV_antisense/hub.txt
Other Other Other hg19 http://bimsbstatic.mdc-berlin.de/hubs/other/Other/hub.txt
Rajewsky test_mschilli test hub by Marcel Schilling http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/test_mschilli/hub.txt
Rajewsky Planaria_genome Planaria genome assembly (v3.1) with annotation tracks schMed1 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/PlanariaGenome/hub.txt
Rajewsky deep DEEP data liver hepatocytes Hf01 hg38 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/deep/hub.txt
Rajewsky chimeras target (i.e. 3' parts) of miRNA:target chimeras ce6 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/chimeras/hub.txt
Rajewsky smedAS AS project tracks schMed1 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/smedAS/hub.txt
Rajewsky DVEX D. melanogaster single-cell tracks dm6 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/DVEX/hub.txt
Rajewsky humusc Human muscle satellite single-cell tracks hg38 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/humusc/hub.txt
Rajewsky Kidney Kidney glomeruli tracks mm10 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/kidney/hub.txt
Rajewsky circBase circBase circRNA candidates and RNA-seq coverage tracks hg19 mm9 ce6 dm3 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/circBase/hub.txt
Rajewsky PicTar2_predictions PicTar2 miRNA target site predictions including conserved and non-conserved miRNA targetsites ce6 dm3 mm9 hg18 hg19 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/PicTar2/hub.txt
Rajewsky A549_riboprof ribosome profiling in A549 cells infected with influenza PR8 H1N1 hg19 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/A549_riboprof/hub.txt
Rajewsky HCMV_riboprof ribosome profiling in HFF cells infected with HCMV hg19 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/HCMV_riboprof/hub.txt
Rajewsky Huh7_riboprof ribosome profiling in Huh7 cells infected with YFV hg19 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/Huh7_riboprof/hub.txt
Rajewsky Dicer Dicer paper (Rybak et al. 2014) RNA-seq and PAR-CLIP depth-of-coverage and binding sites for three replicates and consensus binding sites hg19 ce6 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/Dicer/hub.txt
Rajewsky mouse_heart RNA-seq (total RNA, ribominus, strand-specific) on mice after IR mm10 http://bimsbstatic.mdc-berlin.de/hubs/rajewsky/mouse_heart/hub.txt


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